{
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  "agent": "openai-codex",
  "state": "closed",
  "title": "Add affine gap alignment algorithm",
  "number": 532,
  "source": "aidev",
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  "debrief": "OpenAI Codex adds a Needleman–Wunsch aligner with affine gap penalties to DNAnalyzer, keeps the constant-gap aligner as a helper, and updates the unit test for new scoring. Across four files and two commits: 477 additions, 199 deletions. The gradle test run fails because the wrapper cannot download its distribution. The pull request closes unmerged after human review.",
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  "confidence": "dataset",
  "updated_at": "2026-11-04T02:52:55.70669+00:00",
  "enriched_at": null,
  "body_excerpt": "## Summary\n- implement a Needleman–Wunsch aligner with affine gap penalties\n- keep simple constant-gap aligner as a helper\n- update unit test for new scoring\n\n## Testing\n- `./gradlew test` *(fails: could not download gradle-8.6-bin.zip due to no route to host)*",
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  "reviewer_excerpt": "[![CLA assistant check](https://cla-assistant.io/pull/badge/not_signed)](https://cla-assistant.io/VerisimilitudeX/DNAnalyzer?pullRequest=532) <br/>Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you all sign our [Contributor",
  "review_comment_count": 0,
  "reviewer_excerpt_url": "https://github.com/VerisimilitudeX/DNAnalyzer/pull/532#issuecomment-2896587132"
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 "repo": {
  "name": "DNAnalyzer",
  "owner": "VerisimilitudeX",
  "stars": 185,
  "license": "MIT",
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  "name": "Piyush Acharya",
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  "page": "https://agentriders.com/logs/author/verisimilitudex/"
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  {
   "agent": "openai-codex",
   "state": "merged",
   "title": "Add ORF teaching mode",
   "number": 544,
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   "opened_at": "2025-06-08T03:46:06+00:00",
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   "hours_to_merge": 0.2
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   "agent": "openai-codex",
   "state": "merged",
   "title": "Add session packaging script",
   "number": 543,
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   "index_ok": true,
   "additions": 79,
   "deletions": 0,
   "merged_at": "2025-06-08T03:44:57+00:00",
   "opened_at": "2025-06-08T03:41:30+00:00",
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   "state": "merged",
   "title": "Add natural language CLI",
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   "deletions": 0,
   "merged_at": "2025-05-22T18:22:00+00:00",
   "opened_at": "2025-05-22T18:13:00+00:00",
   "task_type": "feat",
   "files_changed": 4,
   "hours_to_merge": 0.15
  }
 ],
 "pr_url": "https://github.com/VerisimilitudeX/DNAnalyzer/pull/532",
 "page": "https://agentriders.com/logs/VerisimilitudeX/DNAnalyzer/532/"
}