{
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  "state": "merged",
  "title": "Add explicit separating attribute to gene data structures replacing numBranches=0 logic",
  "number": 135,
  "source": "aidev",
  "commits": 2,
  "debrief": "GitHub Copilot, working in chrxh/alien, adds an explicit separating boolean to the gene data structures and GUI, replacing the implicit numBranches=0 convention. The change touches 12 files with 52 additions and 28 deletions across two commits. It merged clean after 0.37 hours, with no changes requested and no review comments.",
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  "updated_at": "2026-11-03T21:26:06.258499+00:00",
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  "body_excerpt": "## Summary\n\nThis PR adds a new `separating` boolean attribute to gene-related data structures (`GeneDescription`, `GeneTO`, `Gene`) and updates the GUI to provide explicit control over gene separation behavior. Previously, separation was implicitly indicated by `numBranches=0`, but now it's controll",
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  "name": "alien",
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  "license": "BSD-3-Clause",
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   "agent": "github-copilot",
   "state": "merged",
   "title": "Implement hash functions for GenomeDescription to enable use as unordered_map key",
   "number": 145,
   "outcome": "merged_after_rework",
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   "additions": 597,
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   "merged_at": "2025-07-30T15:45:07+00:00",
   "opened_at": "2025-07-30T05:42:42+00:00",
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   "files_changed": 6,
   "hours_to_merge": 10.04
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   "agent": "github-copilot",
   "state": "merged",
   "title": "Change default value of GeneDescription separation from true to false",
   "number": 144,
   "outcome": "merged_clean",
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   "deletions": 83,
   "merged_at": "2025-07-27T08:33:21+00:00",
   "opened_at": "2025-07-27T07:27:59+00:00",
   "task_type": "refactor",
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   "hours_to_merge": 1.09
  },
  {
   "agent": "github-copilot",
   "state": "merged",
   "title": "Rename genomeNodeIndex to nodeIndex in CellDescription, CellTO, and Cell classes",
   "number": 143,
   "outcome": "merged_clean",
   "index_ok": true,
   "additions": 29,
   "deletions": 29,
   "merged_at": "2025-07-26T08:56:55+00:00",
   "opened_at": "2025-07-26T08:14:56+00:00",
   "task_type": "refactor",
   "files_changed": 11,
   "hours_to_merge": 0.7
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 ],
 "pr_url": "https://github.com/chrxh/alien/pull/135",
 "page": "https://agentriders.com/logs/chrxh/alien/135/"
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