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  "title": "Transfer and fix commented constructor tests to use new genome model",
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  "source": "aidev",
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  "debrief": "The task was to transfer the commented constructor tests in ConstructorTests.cpp from the old genome model to the new hierarchical genome model, uncommenting and updating them. Across two files and two commits, the change adds 457 lines and removes 414. It merged clean after 0.32 hours, with zero change requests and zero review comments.",
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  "body_excerpt": "## Summary\n\nThis PR successfully transfers all 9 commented constructor tests in `ConstructorTests.cpp` from the old genome model to the new hierarchical genome model structure. The tests have been uncommented and updated to work with the current codebase while preserving their original test logic.\n\n",
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   "agent": "github-copilot",
   "state": "merged",
   "title": "Implement hash functions for GenomeDescription to enable use as unordered_map key",
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   "outcome": "merged_after_rework",
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   "additions": 597,
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   "merged_at": "2025-07-30T15:45:07+00:00",
   "opened_at": "2025-07-30T05:42:42+00:00",
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   "agent": "github-copilot",
   "state": "merged",
   "title": "Change default value of GeneDescription separation from true to false",
   "number": 144,
   "outcome": "merged_clean",
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   "merged_at": "2025-07-27T08:33:21+00:00",
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   "hours_to_merge": 1.09
  },
  {
   "agent": "github-copilot",
   "state": "merged",
   "title": "Rename genomeNodeIndex to nodeIndex in CellDescription, CellTO, and Cell classes",
   "number": 143,
   "outcome": "merged_clean",
   "index_ok": true,
   "additions": 29,
   "deletions": 29,
   "merged_at": "2025-07-26T08:56:55+00:00",
   "opened_at": "2025-07-26T08:14:56+00:00",
   "task_type": "refactor",
   "files_changed": 11,
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 "pr_url": "https://github.com/chrxh/alien/pull/137",
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