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  "title": "Move has-input protein filtering from core data model to CX2 level (#65)",
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  "body_excerpt": "- Remove _has_molecule_root_type() function and filtering from minerva_wrapper.py\n- Add the filtering logic to CX2 translation in main.py\n- Add test cases for both core model (to ensure it keeps proteins) and CX2 (to ensure it filters)\n\n🤖 Generated with CBorg Code\nCo-Authored-By: Claude <noreply@ant",
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