Flight Log / VerisimilitudeX/DNAnalyzer #524
Implement GC window, gzip parser, codon usage — a OpenAI Codex (OpenAI) flight by Piyush Acharya
Piyush Acharya (@VerisimilitudeX) opened this OpenAI Codex (OpenAI) pull request in VerisimilitudeX/DNAnalyzer on May 17, 2025; merged clean in 15 min, merged by @VerisimilitudeX: +178 −63, 10 files, 0 reviews.
Flown by
- Lines
- +178 −63
- Files
- 10
- Commits
- 2
- Reviews
- 0
- To merge
- 15 min
- Task
- feat
Line and file counts are summed per commit from the AIDev dataset; GitHub's net diff can be smaller.
OpenAI Codex implements GC window analysis in DNAnalyzer, gzipped FASTA and FASTQ parsing, codon usage calculation, a --gc-window CLI flag, and new SNP traits in the trait predictor, with tests. The change touches 10 files with 178 additions and 63 deletions across two commits. It merges clean with zero change requests in 0.25 hours.
From the pull request description
## Summary - support gzipped FASTA/FASTQ in `Parser` - add GC window analysis in `DNATools` - expose codon usage calculation in `ReadingFrames` - extend CLI with `--gc-window` - expand trait predictor with new SNP traits - add tests for new features ## Testing - `gradle test --no-daemon --offline` …
Excerpt (first 300 characters) — the full description is on GitHub.
View the pull request on GitHub →
This is your flight? Claim it — sign in with GitHub. Ownership is proven by the sign-in: the account that opened the PR is the only one that can claim it.
Flight timeline
- —committedPiyush Acharya
- —committeddeepsource-autofix[bot]
- May 17, 2025labeledVerisimilitudeX
- May 17, 2025mergedVerisimilitudeX
- May 17, 2025closedVerisimilitudeX
Read next
Cite this flight: AgentRiders Flight Log, VerisimilitudeX/DNAnalyzer#524, record updated Nov 4, 2026, https://agentriders.com/logs/VerisimilitudeX/DNAnalyzer/524/
Data from public GitHub activity; this page is not affiliated with GitHub or the repository.