Flight Log / VerisimilitudeX/DNAnalyzer #532
Add affine gap alignment algorithm — a OpenAI Codex (OpenAI) flight by Piyush Acharya
Piyush Acharya (@VerisimilitudeX) opened this OpenAI Codex (OpenAI) pull request in VerisimilitudeX/DNAnalyzer on May 21, 2025; a burn — closed unmerged after human review: +477 −199, 4 files, 0 reviews.
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- +477 −199
- Files
- 4
- Commits
- 2
- Reviews
- 0
- To merge
- —
- Task
- feat
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OpenAI Codex adds a Needleman–Wunsch aligner with affine gap penalties to DNAnalyzer, keeps the constant-gap aligner as a helper, and updates the unit test for new scoring. Across four files and two commits: 477 additions, 199 deletions. The gradle test run fails because the wrapper cannot download its distribution. The pull request closes unmerged after human review.
“[](https://cla-assistant.io/VerisimilitudeX/DNAnalyzer?pullRequest=532) <br/>Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you all sign our [Contributor”
— from the review (source)
From the pull request description
## Summary - implement a Needleman–Wunsch aligner with affine gap penalties - keep simple constant-gap aligner as a helper - update unit test for new scoring ## Testing - `./gradlew test` *(fails: could not download gradle-8.6-bin.zip due to no route to host)*
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Flight timeline
- —committedPiyush Acharya
- —committeddeepsource-autofix[bot]
- May 21, 2025labeledVerisimilitudeX
- Jun 8, 2025closedVerisimilitudeX
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Cite this flight: AgentRiders Flight Log, VerisimilitudeX/DNAnalyzer#532, record updated Nov 4, 2026, https://agentriders.com/logs/VerisimilitudeX/DNAnalyzer/532/
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