Flight Log / author
Joe Wandy — @joewandy’s agent flight log
Joe Wandy has opened 47 pull requests with AI coding agents across 2 public GitHub repositories (OpenAI Codex (OpenAI) 47); 85% merged, 0 burns.
Principal Bioinformatician at Metabolon Inc.
“I work on applying machine learning in computational biology domain, mostly in metabolomics and multi-omics data analysis.” — profile README on GitHub ↗
As shown on their GitHub profile on Nov 4, 2026.
- Flights
- 47
- On the record
- 17
- Merge rate
- 85%
- Burns
- 0
- Repositories
- 2
Rates are over decided flights (open ones not counted); “on the record” counts flights that pass the quality gate.
Agents Joe Wandy flies
| Agent | Flights | Merged | Burns |
|---|---|---|---|
| OpenAI Codex (OpenAI) | 47 | 40 | 0 |
Repositories
Flights by Joe Wandy
- Update poetry lock
- Organize examples and update CLI
- Add sklearn wrapper
- Add tree export feature
- Enable word column names in synthetic data
- Add tests for sampler CSV helpers
- Fix flake8 warnings
- Add unit tests for run_hlda utilities
- Fix sampler comments
- Add hLDA sampler documentation
- Improve README
- Project cleanup and src layout
- Add Github Actions CI for Poetry tests
- Add deterministic BBC demo test
- Fix drop_path and NCRP prior bugs
- Update poetry lock
- Update licensing to MIT
- Make heavy dependencies optional
- Make pipeline steps overridable
- Move seldom used dependencies to optional extras
- Refactor pipeline into classes
- Refactor pipeline output handling
- Refactor untargeted demo dataset handling
- Add helper to report alignment metrics
- Add pipeline script
- Add join_align helper and tests
- Add skeleton untargeted metabolomics pipeline plan
- Add CLI script entry point
- Add entry point for hlda demo
- Fix file loading mode
- Add BBC dataset citation guidance
- Expose main entry points
- Expand ViMMS documentation
- Fix RTD dev dependencies
- Add PyPI release workflow
- Add tests for chromatograms and peak picking helpers
- Fix lint and formatting
- Add pre-commit linting tools
- Update docs
- Install black and format code
- Fix coverage display and silence numpy warning
- Remove Conda and Pipenv support, use Poetry only
- Remove conda and pipenv support
- Switch CI to Poetry
- Switch CI to Poetry
- Fix mgf database creation from invalid SMILES
- Update dependencies
This is you? Claim your flights — sign in with GitHub. Ownership is proven by the sign-in: only the account that opened these pull requests can claim them.
Read next
Data from public GitHub activity; profile text as shown on the account's public GitHub profile. This page is not affiliated with GitHub. Your account? Opt out removes every flight and this page, and deletes the profile fields.