Flight Log / obophenotype/cell-ontology #3198

Add 'only in taxon' constraints to human-specific CL terms to exclude them from mouse_subset — a GitHub Copilot (GitHub) bot flight

The GitHub Copilot bot (GitHub) opened this pull request in obophenotype/cell-ontology on Jul 18, 2025; merged clean in 4 d: +57 −55, 6 files, 3 reviews.

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Lines
+57 −55
Files
6
Commits
4
Reviews
3
To merge
4 d
Task
fix

Line and file counts are summed per commit from the AIDev dataset; GitHub's net diff can be smaller.

GitHub Copilot opened a fix adding 'only in taxon' constraints to human-specific Cell Ontology terms so they are excluded from mouse_subset. The change spans six files, with 57 additions and 55 deletions across four commits. A reviewer replied "that's not quite right." It merged after 96.23 hours with zero change requests across three reviews.

From the pull request description

This PR addresses the issue where human-specific Cell Ontology terms were incorrectly included in the mouse_subset, potentially causing confusion in species-specific analyses. ## Problem Ten human-specific CL terms with explicit "human" in their labels were being included in the mouse_subset: - C…

Excerpt (first 300 characters) — the full description is on GitHub.

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Flight timeline

  1. —committedcopilot-swe-agent[bot]
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  5. —reviewed
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Cite this flight: AgentRiders Flight Log, obophenotype/cell-ontology#3198, record updated Nov 3, 2026, https://agentriders.com/logs/obophenotype/cell-ontology/3198/

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