Flight Log / theosanderson/taxonium #715
Add metadata filtering and align JS output — a OpenAI Codex (OpenAI) flight by Theo Sanderson
Theo Sanderson (@theosanderson) opened this OpenAI Codex (OpenAI) pull request in theosanderson/taxonium on Jun 19, 2025; open and stale: +1,303 −6, 7 files, 0 reviews.
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- +1,303 −6
- Files
- 7
- Commits
- 2
- Reviews
- 0
- To merge
- —
- Task
- feat
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From the pull request description
## Summary - add optional columns argument to the Node converter - place amino-acid mutations before nucleotide ones - store nuc_for_codon zero-indexed to match Python - document the new argument in the README - fix gene indexing to use 0-based coordinates ## Testing - `PYTHONPATH=taxoniumtools/src…
Excerpt (first 300 characters) — the full description is on GitHub.
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Flight timeline
- —committedTheo Sanderson
- —committedTheo Sanderson
- Jun 19, 2025labeledtheosanderson
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Cite this flight: AgentRiders Flight Log, theosanderson/taxonium#715, record updated Nov 3, 2026, https://agentriders.com/logs/theosanderson/taxonium/715/
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